1980: Movable Genetic Elements, Vol. XLV
Organizer: James Watson
Part 1 Symposium Participants vForeword xiiiIntroductionSome General Questions about Movable Elements and Their Implications A. Campbell 1Inversion Elements in BacteriaTrans-acting Genes of Bacteriophages P1 and Mu Mediate Inversion of a Specific DNA Segment Involved in Flagellar Phase Variation of Salmonella T. Iino and K Kut- sukake 11Analysis of the Functional Components of the Phase Variation System M. Silverman, J. Zieg, G. Mandel, and M. Simon 17Transposable Elements in Bacteria: General PropertiesGenesis and Natural History of IS-mediated Transposons S. Iida, J. Meyer, and W. Arber 27 Appendix I: Spontaneous Mutations in the Escherichia coli Propage P1 and IS-me- diated Processes W. Arber, M. Hümbelin, P. Caspers, H. J. Reif S. Iida, and J. Meyer 38 Appendix II: Analysis of Transposition of IS1-kan and Its Relatives H. J. Reif and W. Arber 40Transposons Encoding Trunethoprim or Gentamicin Resistance in Medically Important Bacteria N. Datta, M. Nugent, and H. Richards 45A Study of the Dissemination of Tn1681: A Bacterial Transposon Encoding a Heat-sta- ble Toxin among Enterotoxigenic Escherichia coli Isolates M. So, R. Atchison, S. Falkow, S. Moseley, and B. J. McCarthy 53Basis of Transposition and Gene Amplification by Tn1721 and Related Tetracycline-re- sistance Transposons R. Schmitt, J. Altenbuchner, K Wiebauer, W. Arnold, A. Pühler, and F. Schöffi 59 Appendix: Transposons Tn50l and Tn1721 Are Closely Related C. -L. Choi, J. Grinsted, J. Altenbuchner, A Schmitt, and M. H. Richmond 64Hitchhiking Transposons and Other Mobile Genetic Elements and Site-specific Recoin- bination Systems in Staphylococcus aureus R. P. Novick, S. A. Khan, E. Murphy, S. Iordanescu, I. Edelman, J. Krolewski, and M. Rush 67Evidence for Conjugal Transfer of a Streptococcus faecalis Transposon (Tn916) from a Chromosomal Site in the Absence of Plasmid DNA A. F. Franke and D. B. Clewell 77Inverted-repeat Nucleotide Sequences in Escherichia coli and Caulobacter crescentus P. Nisen and L. Shapiro 81ISR1: An Insertion Element Isolated from the Soil Bacterium Rhizobium lupini U. B. Priefer, H. J. Burkardt, W. Klipp, and A. Pühler 87Transposable Elements in Bacteria: Structure and FunctionIS1-mediated DNA Rearrangements H. Saedler, G. Cornelis, J. Cullum, B. Schumacher, and H. Sommer 93Genetic Organization of Tn5 S. J. Rothstein, R. A. Jorgensen, J. C. -P. Yin, Z. Yong-di, R. C. Johnson, and W. S. Reznikoff 99Structural Analysis of Tn5 E. -A. Auerswald and H. Schaller 107Insertion, Excision, and Inversion of Tn5 D. E. Berg, C. Egner, B. J. Hirschel, J. Howard, L. Johnsrud, R. A. Jorgensen, and T. D. Tlsty 115Analysis of the Structure and Function of the Kanamycin-resistance Transposon Tn903 N. D. F. Grindley and C. M. Joyce 125Identification of a Sex-factor-affinity Site in E. coli as gd M. S. Guyer, R. A. Reed, J. A. Steitz, and K B. Low 135Internal Rearrangements of IS2 in Escherichia coli A. Ahmed, K Bidwell, and R. Musso 141Activation of Gene Expression by IS2 and IS3 N. Glansdorff, D. Charlier, and M. Za- farullah 153IS1-promoted Events Associated with Drug-resistance Plasmids M. Chandler, M. Cler- get, and L. Caro 157Intramolecular Transposition of a b-Lactamase Sequence and Related Genetic Re- arrangements R. C. Clowes, P. L. Holmans, and S. J. Chiang 167Detection of Replicational Inceptor Signals in IS5 M. Lusky, M. Kröger, and G. Hobom 173Transposable Elements in Bacteria: Factors Affecting TranspositionGenes Are Things You Have Whether You Want Them or Not C. Sapienza and W. F. Doolittle 177Transposition Immunity L. J. Wallace, J. M. Ward, P. M. Bennett, M. K. Robinson, and M. H. Richmond 183Regulation of Tn5 Transposition D. Biek and J. R. Roth 189Mutants of Escherichia coli Affected in the Processes of Transposition and Genomic Rearrangements G. B. Smirnov, T. S. Ilyina, Y. M. Romanova, A. P. Markov, and E. V. Nechaeva 193Isolation of a polA Mutation That Affects Transposition of Insertion Sequences and Transposons M. B. Clements and M. Syvanen 201Substitution of Silent Bacterial Genes by a Bacteriophage l Variant Carrying IS1 E. Olson, P. Tomich, C. Parsons, K Leason, D. Jackson, and D. Friedman 205Transposable Elements in Bacteria: Mechanism of TranspositionStudies on Transposition Mechanisms and Specificity of IS4 R. Klaer, S. Kuhn, H. -J. Fritz, E. Tillmann, I. Saint-Girons, P. Habermann, D. Pfe!fer, and P. Starlinger 215Genetic Organization of Tn l0 and Analysis of Tn l0-associated Excision Events N. Kleckner, T. J. Foster, M. A. Davis, S. Hanley- Way, S. M. HaIling, V. Lundblad, and K Takeshita 225Recombination Involving Transposable Elements: On Replicon Fusion C. J. Muster and J. A. Shapiro 239Genetic and Sequencing Studies of the Specificity of Transposition into the lac Region of E. coli J. H. Miller, M. P. Cabs, and D. J. Galas 243Tn3 Encodes a Site-specific Recombination System: Identification of Essential Se- quences, Genes, and the Actual Site of Recombination F. Heifron, R. Kostriken, C. Morita, and R. Parker 259Tn3: Transposition and Control M. J. Casadaban, J. Chou, P. Lemaux, C. -P. D. Tu, and S. N. Cohen 269Transposon-specilled, Site-specific Recombination Systems D. Sherratt, A. Arthur, and M. Burke 275Mechanism of Insertion and Cointegration Mediated by IS1 and Tn3 E. Ohtsubo, M. Zenilman, H. Ohtsubo, M. McCormick, C. Machida, and Y. Machida 283Site-specific Recombination and Its Role in the Life Cycle of Bacteriophage P1 N. Steinberg, D. Hamilton, S. Austin, M. Yarmolinsky, and A Hoess 297Transposable Elements in Bacteria: Mechanisms of Mu Transposition Mechanism of Bacteriophage Mu DNA Transposition G. Chaconas, R. M. Harshey, M. Sarvetnick, and A. I. Bukhari 311 Appendix: A Model for Mu Transposition R. M. Harshey and A. I. Bukhari 319Transposition Studies Using a ColE 1 Derivative Carrying Bacteriophage Mu A. Coelho, D. Leach, S. Maynard-Smith, and N. Symonds 323Two Pathways in Bacteriophage Mu Transposition? D. Kamp and R. Kahmann 329Transposition of Bacteriophage Mu: Properties of l Phages Containing Both Ends of Mu M. M. Howe and J. W. Schumm 337Regulation of Integration and Replication Functions of Bacteriophage Mu P. van de Putte, M. Giphart-Gassler, N. Goosen, T. Goosen, and E. van Leerdam 347Genetic Study of Mu Transposition and Mu-mediated Chromosomal Rearrange- ments L. Desmet, M. Faelen, N. Lefèbvre, A. Résibois, A. Toussaint, and F. van segem 355Specificity of Bacteriophage Mu Integration into DNAs of Different Origins E. Piru- zian, V. Andrianov, M. Mogutov, E. Krivtsova, V. Yuzeeva, A. Vetoshkin, and N. Kobets 365Biochemistry of RecombinationGenome Fusion H. Potter and D. Dressier 371Kinetics and Topology of Homologous Pairing Promoted by Escherichia coli recA- gene Protein C. M. Radding, T. Shibata, C. DasGupta, R. P. Cunningham, and L. Osber 385DNA Gyrase: Site-specific Interactions and Transient Double-strand Breakage of DNA M. Gellert, L. M. Fisher, H. Ohmori, M. H. O'Dea, and K Mizuuchi 391In Vitro Study of Illegitimate Recombination: Involvement of DNA Gyrase H. Ikeda, K Moriya, and T. Matsumoto 399Instability of Palindromic DNA in Escherichia coli J. Collins 409Strand Exchange in l Integrative Recombination: Genetics, Biochemistry, and Models H. A. Nash, K Mizuuchi, L. W. Enquist, and R. A. Weisberg 417Structure and Function of the Phage l att Site: Size, Int-binding Sites, and Location of the Crossover Point K Mizuuchi, R. Weisberg, L. Enquist, M. Mizuuchi, M. Burac- zynska, C. Foeller, P. L. Hsu, W. Ross, and A. Landy 429Regulation of the Integration-Excision Reaction by Bacteriophage l H. I. Miller, J. Abraham, M. Benedik, A. Campbell, D. Court, H. Echols, R. Fischer, J. M. Galindo, G. Guarneros, T. Hernandez, D. Mascarenhas, C. Montanez, D. Schindler, U. Schmeissner, and L. Sosa 439Part 2Genetic Instability in Plant SystemsInstability among the Components of a Regulatory Element Transposon in Maize P. A. Peterson 447Regulation of the Enzyme UFGT by the Controlling Element Ds in bz-m4, an Unstable Mutant in Maize H. K. Dooner 457Detection of Changes in Maize DNA at the Shrunken Locus Due to the Intervention of Ds Elements B. Burr and F A. Burr 463Controlling Elements at the Opaque-2 Locus of Maize: Their Involvement in the Origin of Spontaneous Mutation F Salamini 467
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The Role of Controlling Elements in the Instability of Flower Color in Antirrhinum majus and Impatiens balsamina G. R. K. Sastry, K. M. Aslam, and V. Jeffries 477 Molecular Genetic Analysis of Klebsiella pneumoniae Nitrogen-fixation (nif) Genes M. Ausubel and F. C. Cannon 487 Appendix: Molecular Genetics of Symbiotic Nitrogen Fixation G. B. Ruvkun, S. R. Long, H. M. Meade, and F. M. Ausubel 493 Nucleotide Sequence Organization in Plant Chromosomes and Evidence for Sequence Translocation during Evolution A. B. Flavell, M. O'Dell, and J. Hutchinson 501 Genetic Instability in Ascobolus immersus: Modalities of Back-mutations, Intragenic Mapping of Unstable Sites, and Unstable Insertion. Preliminary Biochemical Data B. Decaris, F. Francou, A. Kouassi, C. Lefort, and G. Rizet 509 Transposable Elements in Drosophilia and Yeast A Novel Dominant Mutant Allele at the white Locus of Drosophila melanogaster is Muta ble P. M. Bingham 519 Derivation-dependent Distribution of Insertion Sites for a Drosophila Transposon G. Ising and K. Block 527 Transpositions, Mutable Genes, and the Dispersed Gene Family Dm225 in Drosophila melanogaster B. Rasmuson, B. M. Westerberg, A. Rasmuson, V. A. Gvozdev, E. S. Belyaeva, and Y. V. Ilyin 545 Site-specific Intrachromosomal Rearrangements in Drosophila melanogaster: Cytogenetic Evidence for Transposable Elements J. K Lim 553 Hybrid Dysgenesis in Drosophila and the Stochastic Loss Hypothesis W. R.. Engels 561 Transposable Elements Involving the his4 Region of Yeast H. Greer, M. Igo, and F. de Bruijn 567 Transposable Elements (Ty) in Yeast G. Fink, P. Farabaugh, G. Roeder, and D. Cha- leff 575 Studies on the Transposable Element Ty1 of Yeast I. RNA Homologous to Ty1A T. Elder, T. P. St. John, D. T. Stinchcomb, and R.. W. Davis 581 II. Recombination and Expression of Ty1 and Adjacent Sequences S. Scherer and R. W. Davis 584 Studies on Transposable Elements in Yeast I. ROAM Mutations Causing Increased Expression of Yeast Genes: Their Activation by Signals Directed toward Conjugation Functions and Their Formation by Inser- tion of Tyl Repetitive Elements B. Errede, T. S. Cardillo, G. Wever, and F. Sher- man 593 II. Deletions, Duplications, and Transpositions of the COR Segment that Encom- passes the Structural Gene of Yeast Iso- l-cytochrome c J. I. Stiles, L. R. Friedman, and F. Sherman 602 Dispersed Movable Sequences Characterization of the Yeast Mobile Element Ty1 H. Eibel, J. Gafner, A. Stotz, and P. Philippsen 609 copia-like Transposable Elements in the Drosophila Genome G. M. Rubin, W J. Brorein, Jr., P. Dunsmuir, A. J. Flavell, A Levis, E. Strobel, J. I. Toole, and F. Young 619 Nomadic Gene Families in Drosophila M. W. Young and H. F. Schwartz 629 Mobile Dispersed Genetic Elements and Other Middle Repetitive DNA Sequences in the Genomes of Drosophila and Mouse: Transcription and Biological Signifi- cance G. P. Georgiev, Y. V. Ilyin, V. G. Chmeliauskaite, A. P. Ryskov, D. A. Kra- merov, K. G. Skryabin, A. S. Krayev, E. M. Lukanidin, and M. S. Grigoryan 641 General Properties of Mobile Dispersed Genetic Elements in Drosophila melano gas- ter N. A. Tchurikov, Y. V Ilyin, K G. Skryabin, E. V. Ananiev, A. A. Bayev, Jr., A. S. Krayev, E. S. Zelentsova, V. V. Kulguskin, N. V. Lyubomirskaya, and G. P. Georgiev 655 Structure and Expression of Ribosomal RNA Genes of Drosophila melanogaster Inter- rupted by Type-2 Insertions E. O. Long, M. L. Rebbert, and I. B. Dawid 667 Selection and Transposition of Mobile Dispersed Genes in Drosophila melano gas- ter V. A. Gvozdev, E. S. Belyaeva, Y. V Ilyin, I. S. Amosova, and L. Z. Katdanov 673 Retroviruses as Insertion Elements Integration and Activity of Mammary Tumor Virus Genes: Regulation by Hormone Re- ceptors and Chromosomal Position K. A Yamamoto, V. L. Chandler, S. R. Ross, D. S. Ucker, J. C. Ring, and S. C. Feinstein 687 The Long Terminal Repeat of Moloney Sarcoma Provirus W. L. McClements, R.. Dhar, D. G. Blair, L. Enquist, M. Oskarsson, and G. F. Vande Woude 699 Moloney Murine Leukemia Virus Is a Transposon: Nucleotide Sequence Analysis Iden- tifies Genes and Replication Details J. G. Sutcliffe, T. M. Shinnick, and R. A.. Lerner 707 Structure of Cloned Retroviral Circular DNAs: Implications for Viral Integration C. Shoemaker, S. Goff, E. Gilboa, M. Paskind, S. W. Mitra, and D. Baltimore 731 Evolution of Retroviruses from Cellular Movable Genetic Elements K Shimotohno and H. M. Temin 719 DNA Intermediates in the Replication of Retroviruses Are Structurally (and Perhaps Functionally) Related to Transposable Elements J. E. Majors, R. Swanstrom, W. J. DeLorbe, U. S. Payne, S. H. Hughes, S. Ortiz, N. Quintrell, J. M. Bishop, and H. E. Varmus 731 Structural Analogies among Avian Retroviral DNAs and Transposable Elements A. Skalka, G. Ju, F. Hishinuma, P. J. DeBona, and S. Astrin 739 Genomic Rearrangements and Tumor-forming Potential in SV40-transformed Mouse Cell Line and Its Hybrid and Cybrid Progeny R. Sager, A. Anisowicz, and N. Howell 747 Organization of Genes Evidence for the Involvement of Recombination and Amplification Events in the Evolu tion of Secale Chromosomes J. Bedbrook, J. Jones, and R. Flavell 755 The Organization of Repetitive Sequences in Mammalian Globin Gene Clusters E. F. Fritsch, C. K. J. Shen, R. M. Lawn, and T. Maniatis 761 A Repetitive Structure in the Chick a2-Collagen Gene G. Vogeli, H. Ohkubo, V. E. Av- vedimento, M. Sullivan, Y. Yamada, M. Mudryj, I. Pastan, and B. de Crombrugghe 777 Chromosomal and Extrachromosomal Localization of Amplified Dihydrofolate Reduc- tase Genes in Cultured Mammalian Cells R. T. Schimke, P. C. Brown, R. J. Kauf- man, M. McGrogan, and D. L. Slate 785 SUC Genes of Yeast: A Dispersed Gene Family M. Carlson, B. C. Osmond, and D. Botstein 799 Conserved Sex-chromosome-associated Nucleotide Sequences in Eukaryotes L. Singh, I. F. Purdom, and K. W. Jones 805 The Organization of Drosophila melanogaster Histone Genes K. Saigo, L. Millstein, and C. A. Thomas, Jr. 815 Linkage and Expression of Foreign DNA in Cultured Animal Cells M. Perucho and M. Wigler 829 Rearrangements in Antibody Genes Somatic Reorganization of Immunoglobulin Genes during Lymphocyte Differentia- tion S. Tonegawa, H. Sakano, R. Maki, A. Traunecker, G. Heinrich, W. Roeder, and Y. Kurosawa 839 Recombination Events That Activate, Diversify, and Delete Immunoglobulin Genes P. Leder, F. E. Max, J. G. Seidman, S.-P. Kwan, M. Scharif, M. Nau, and B. Norman 859 Immunoglobulin Genes Undergo Multiple Sequence Rearrangements during Differen- tiation T. H. Rabbitts, D. L. Bentley, W. Dunnick, A. Forster, G. E. A. R. Matthys- sens, and C. Milstein 867 RNA Processing in Immunoglobulin Gene Expression R.. Wall, E. Choi, C. Carter, M. Kuehl, and J. Rogers 879 Two Types of DNA Rearrangements in Immunoglobulin Genes L. Hood, M. Davis, P. Early, K. Calame, S. Kim, S. Crews, and H. Huang 887 Studies on the Nature and Germ-line Stability of DNA Sequences Flanking the Mouse Immunoglobulin Heavy-chain Constant-region Genes K. B. Marcu, N. Arnheim, J. Banerji, N. A. Penncavage, P. Seperack, R. Lang, R. Miesfeld, L. Harris, and R. Greenberg 899 Organization and Reorganization of Immunoglobulin Heavy-chain Genes T. Honjo, T. Kataoka, Y. Yaoita, A. Shimizu, N. Takahashi, Y. Yamawaki-Kataoka, T. Nikaido, S. Nakai, M. Obata, T. Kawakami, and Y. Nishida 913 Reorganization and Expression of Immunoglobulin Genes: Status of Allelic Ele- ments R. P. Perry, C. Coleclough, and M. Weigert 925 Antigenic Variation in Trypanosomes and Mating-type Switch in Yeast DNA Rearrangements Involving the Genes for Variant Antigens in Trypanosoma bru- cei P. Borst, A. C. C. Frasch, A. Bernards, L. H. T. Van der Ploeg, J. H. J. Hoeq makers, A. C. Arnberg, and G. A. M. Cross 935 Contextural Genomic Rearrangements of Variable Antigen Genes in Trypanosoma bru- cei R. O. Williams, J. A. Young, P. A. O. Majiwa, J. J. Doyle, and S. Z. Shapiro 945 Pattern of Switching and Fate of the Replaced Cassette in Yeast Mating-type Intercon- version J. Rine, A Jensen, D. Hagen, L. Blair, and I. Herskowitz 951 Physical Analysis of Mating-type Loci in Saccharomyces cerevisiae K A. Nasmyth, K. Tatchell, B. D. Hall, C. Astell, and M. Smith 961 Irregular Transpositions of Mating-type Genes in Yeast A. J. S. Klar, J. B. Hicks, and J. N. Strathern 983 Chromosomal Rearrangements Accompanying Yeast Mating-type Switching: Evidence for a Gene-conversion Model J. E. Haber, B. Weffenbach, D. T. Rogers, J. McCusker, and L. B. Rowe 991 Mating-type Switching and Mitotic Crossing-over at the Mating-type Locus in Fission Yeast R. Egel 1003 Summary M. B. Yarmolinsky 1009
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